BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB018B09SP1|AL427270
(642 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1544 979 0.0
>3x_Contig1544
Length = 10626
Score = 979 bits (493), Expect = 0.0
Identities = 597/623 (95%), Gaps = 17/623 (2%)
Strand = Plus / Plus
Query: 1 gatcgtgtgtgcgtggttaaatacgtag-agtcttgtccgatgacctttgcgcatatgta 59
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 4756 gatcgtgtgttcgtggttaaatacgtagtagtcttgtccgatgacctttgcgcatatgta 4815
Query: 60 acatttcaaacatgatggatggaaccgttcgttcttgtcgttctctagacactcaccttc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4816 acatttcaaacatgatggatggaaccgttcgttcttgtcgttctctagacactcaccttc 4875
Query: 120 gatgaatccgttgcacactttgcatatagagttattcttctcatgaaagtgtaattggca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4876 gatgaatccgttgcacactttgcatatagagttattcttctcatgaaagtgtaattggca 4935
Query: 180 ataaggttggtcgtctaggatgtagcaggggactctcttcgagaatggtttggaacaagt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4936 ataaggttggtcgtctaggatgtagcaggggactctcttcgagaatggtttggaacaagt 4995
Query: 240 gatacatttgaaacatccacggtgccactgcccagacaactcgttttcgtgttttgaata 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4996 gatacatttgaaacatccacggtgccactgcccagacaactcgttttcgtgttttgaata 5055
Query: 300 gataccttttccgacgacttctttgtgacagtdacgacatggtccgtggcccggtgggta 359
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 5056 gataccttttccgacgacttctttgtgacagttacgacatggtccgtggcccggtgggta 5115
Query: 360 tacttccatcggagtttgttcgtgtaactcctgttgtcttggtaaggagtctcgtatctt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5116 tacttccatcggagtttgttcgtgtaactcctgttgtcttggtaaggagtctcgtatctt 5175
Query: 420 ctctggaggtgtttggattggctcgtgagattctttatggaaattgtaaaaagcttgcgc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 5176 ctctggaggtgtttggattggctcgtgagattctttatggaaattgtaaaaagtt---gg 5232
Query: 480 agtagaattactttgtagcgcgcacattaagcgctgccttcctcgtcaggcgcgcttgca 539
|||||||||||||||||| | ||||||| | |||||||||||||||| ||| |||||
Sbjct: 5233 agtagaattactttgtag---ggacattaa--ggtgccttcctcgtcagg-gcg-ttgca 5285
Query: 540 tttctggaatatttatcatctggcgcgcttcgtaatggcgcataaatatgcgcttgattt 599
||||||||||||||||||||||| | ||||||||| | |||||||||||||||||||
Sbjct: 5286 tttctggaatatttatcatctgg---ggttcgtaatg--ggataaatatgcgcttgattt 5340
Query: 600 ttttaaatgcggcttgttttgta 622
||||||||| || ||||||||||
Sbjct: 5341 ttttaaatg-ggtttgttttgta 5362
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3541
Number of Sequences: 1807
Number of extensions: 3541
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 642
length of database: 10,358,551
effective HSP length: 16
effective length of query: 626
effective length of database: 10,329,639
effective search space: 6466354014
effective search space used: 6466354014
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.8 bits)